Volume 13; Issue 10 Supplem

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BMC Bioinformatics
Volume 13; Issue 10 Supplem

BMC Bioinformatics

Volume 13; Issue 10 Supplem

1

Guest Editors' Introduction

Chen, Jianer, Măndoiu, Ion, Sunderraman, Raj, Wang, Jianxin, Zelikovsky, Alexander

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 164 KB

english, 2012

2

Guided evolution ofin silicomicrobial populations in complex environments accelerates evolutionary rates through a step-wise adaptation

Mozhayskiy, Vadim, Tagkopoulos, Ilias

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 726 KB

english, 2012

3

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence

Chaudhary, Ruchi, Burleigh, J Gordon, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 445 KB

english, 2012

4

Consensus properties for the deep coalescence problem and their application for scalable tree search

Lin, Harris T, Burleigh, J Gordon, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

5

Horizontal gene transfer dynamics and distribution of fitness effects during microbialin silicoevolution

Mozhayskiy, Vadim, Tagkopoulos, Ilias

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.49 MB

english, 2012

6

Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problem

Górecki, Pawel, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.52 MB

english, 2012

7

Comparative evaluation of set-level techniques in predictive classification of gene expression samples

Holec, Matej, Kl�ma, Jir�, �elezn�, Filip, Tolar, Jakub

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 599 KB

english, 2012

8

Exploring biological interaction networks with tailored weighted quasi-bicliques

Chang, Wen-Chieh, Vakati, Sudheer, Krause, Roland, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 333 KB

english, 2012

9

Gene network modular-based classification of microarray samples

Hu, Pingzhao, Bull, Shelley B, Jiang, Hui

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 273 KB

english, 2012

10

A methodology for detecting the orthology signal in a PPI network at a functional complex level

Jancura, Pavol, Mavridou, Eleftheria, Carrillo-de Santa Pau, Enrique, Marchiori, Elena

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 304 KB

english, 2012

11

Efficient and accurate greedy search methods for mining functional modules in protein interaction networks

He, Jieyue, Li, Chaojun, Ye, Baoliu, Zhong, Wei

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 554 KB

english, 2012

12

Computing the protein binding sites

Guo, Fei, Wang, Lusheng

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 712 KB

english, 2012

13

Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study

Jiang, Jonathan Q, Wu, Maoying

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 907 KB

english, 2012

14

Prediction of DNA-binding propensity of proteins by the ball-histogram method using automatic template search

Szabóová, Andrea, Kuželka, Ondřej, železnŷ, Filip, Tolar, Jakub

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 806 KB

english, 2012

15

High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs

Wan, Xiaohua, Zhang, Fa, Chu, Qi, Liu, Zhiyong

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.15 MB

english, 2012

16

The maximum clique enumeration problem: algorithms, applications, and implementations

Eblen, John D, Phillips, Charles A, Rogers, Gary L, Langston, Michael A

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 664 KB

english, 2012

17

Efficient error correction for next-generation sequencing of viral amplicons

Skums, Pavel, Dimitrova, Zoya, Campo, David S, Vaughan, Gilberto, Rossi, Livia, Forbi, Joseph C, Yokosawa, Jonny, Zelikovsky, Alex, Khudyakov, Yury

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 982 KB

english, 2012

18

A systematic comparison of genome-scale clustering algorithms

Jay, Jeremy J, Eblen, John D, Zhang, Yun, Benson, Mikael, Perkins, Andy D, Saxton, Arnold M, Voy, Brynn H, Chesler, Elissa J, Langston, Michael A

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 567 KB

english, 2012

19

Genome plasticity and systems evolution inStreptomyces

Zhou, Zhan, Gu, Jianying, Li, Yong-Quan, Wang, Yufeng

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 871 KB

english, 2012

20

Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes

Zheng, Chunfang, Sankoff, David

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 920 KB

english, 2012

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